Variant report

Variant	rs4233884
Chromosome Location	chr2:10835457-10835458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10824091..10826536-chr2:10834635..10836998,2	MCF-7	breast:
2	chr2:10833924..10835484-chr2:10847110..10849178,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10178212	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10178247	0.80[ASN][1000 genomes]
rs10195255	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs11695330	0.81[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1586622	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1586623	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17364547	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17364568	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918704	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs2110775	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2357656	0.89[JPT][hapmap]
rs4586606	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4614910	0.80[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4669605	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669606	0.80[CEU][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4669607	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55674834	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58445061	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62127228	0.88[EUR][1000 genomes]
rs62127230	0.85[EUR][1000 genomes]
rs6715461	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72777324	0.86[EUR][1000 genomes]
rs72777328	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72777332	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72777335	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7572631	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7593172	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs759398	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9798203	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10830800-10837200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:10835000-10835600	Enhancers	HepG2	liver
3	chr2:10835000-10836000	Enhancers	Fetal Intestine Large	intestine

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