Variant report
| Variant | rs1587740 |
|---|---|
| Chromosome Location | chr12:61019462-61019463 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:61018293..61020271-chr12:61020721..61022454,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1393986 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1503576 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1503577 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1503578 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2174177 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2455855 | 0.81[EUR][1000 genomes] |
| rs2654661 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2654663 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2654664 | 0.82[EUR][1000 genomes] |
| rs2723730 | 0.82[EUR][1000 genomes] |
| rs2723741 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2723742 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7131721 | 0.82[EUR][1000 genomes] |
| rs905559 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038670 | chr12:60953171-61020723 | ZNF genes & repeats Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv470298 | chr12:60962321-61028217 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv469414 | chr12:60966997-61028217 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv559143 | chr12:60966997-61028217 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1051641 | chr12:60986661-61161174 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv541508 | chr12:60986661-61161174 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv1049626 | chr12:61005224-61095254 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 9 | nsv1035259 | chr12:61008196-61095254 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:61017000-61020400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
