Variant report

Variant	rs1588229
Chromosome Location	chr4:171910683-171910684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12645591	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12715920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1396326	0.81[AFR][1000 genomes]
rs1508509	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605652	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605654	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1818341	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1818342	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2877578	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2915629	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843064	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71646860	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991718	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7340865	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7663742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906624	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024230	chr4:171830560-171915978	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1021182	chr4:171830560-171924702	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv880853	chr4:171842726-171939724	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3401886	chr4:171880271-171913562	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1023543	chr4:171895573-171939724	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171909200-171912400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:171910600-171910800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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