Variant report

Variant	rs72991720
Chromosome Location	chr4:171957599-171957600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12645591	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12715920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1508509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1588229	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605652	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605653	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1605654	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1818341	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1818342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2877578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2915629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843064	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71646860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991713	0.85[AFR][1000 genomes]
rs72991717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991718	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72991725	0.88[AFR][1000 genomes]
rs7340865	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7663742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668162	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171953600-171960600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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