Variant report

Variant	rs1588568
Chromosome Location	chr3:103347270-103347271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr3:103346995-103347409	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
TUBBP11	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10937535	0.96[EUR][1000 genomes]
rs11708039	0.95[EUR][1000 genomes]
rs11718600	0.95[EUR][1000 genomes]
rs11914784	0.95[EUR][1000 genomes]
rs11916664	0.96[EUR][1000 genomes]
rs11929452	0.95[EUR][1000 genomes]
rs12386333	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12629042	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12633872	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12634153	0.96[EUR][1000 genomes]
rs12634373	0.96[EUR][1000 genomes]
rs12636722	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1355490	0.81[EUR][1000 genomes]
rs1397923	0.96[EUR][1000 genomes]
rs1448934	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1511628	0.95[EUR][1000 genomes]
rs1511629	0.95[EUR][1000 genomes]
rs1511632	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1511633	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1511634	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1511649	0.96[EUR][1000 genomes]
rs1511652	0.96[EUR][1000 genomes]
rs1588569	0.96[EUR][1000 genomes]
rs1912801	0.96[EUR][1000 genomes]
rs1912802	0.95[EUR][1000 genomes]
rs2044694	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2044695	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2044696	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28860887	0.91[EUR][1000 genomes]
rs4284991	0.96[EUR][1000 genomes]
rs4298044	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4393915	0.96[EUR][1000 genomes]
rs4579022	0.96[EUR][1000 genomes]
rs4856075	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4856081	0.81[EUR][1000 genomes]
rs4856182	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56776054	0.96[EUR][1000 genomes]
rs60517547	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61271586	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67466009	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6763633	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6765506	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6781088	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6801383	0.95[EUR][1000 genomes]
rs6801589	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803993	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72954132	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72960177	0.80[EUR][1000 genomes]
rs7612919	0.96[EUR][1000 genomes]
rs7626524	0.96[EUR][1000 genomes]
rs7628767	0.80[EUR][1000 genomes]
rs7634294	0.96[EUR][1000 genomes]
rs9813247	0.94[EUR][1000 genomes]
rs9820695	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823583	0.95[EUR][1000 genomes]
rs9825311	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830752	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9864537	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9870354	0.95[EUR][1000 genomes]
rs9872409	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9878870	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	esv2757882	chr3:103256253-103421162	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759165	chr3:103256253-103421162	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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