Variant report

Variant	rs67466009
Chromosome Location	chr3:103374450-103374451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10937535	0.81[EUR][1000 genomes]
rs11708039	0.81[EUR][1000 genomes]
rs11718600	0.81[EUR][1000 genomes]
rs11914784	0.81[EUR][1000 genomes]
rs11916664	0.82[EUR][1000 genomes]
rs11929452	0.81[EUR][1000 genomes]
rs12386333	0.81[EUR][1000 genomes]
rs12629042	0.81[EUR][1000 genomes]
rs12630575	0.85[ASN][1000 genomes]
rs12633872	0.81[EUR][1000 genomes]
rs12634153	0.82[EUR][1000 genomes]
rs12634373	0.82[EUR][1000 genomes]
rs12634798	0.85[ASN][1000 genomes]
rs1355490	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397923	0.82[EUR][1000 genomes]
rs1448934	0.81[EUR][1000 genomes]
rs1511629	0.81[EUR][1000 genomes]
rs1511632	0.81[EUR][1000 genomes]
rs1511633	0.81[EUR][1000 genomes]
rs1511634	0.81[EUR][1000 genomes]
rs1511649	0.82[EUR][1000 genomes]
rs1511652	0.82[EUR][1000 genomes]
rs1588568	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1588569	0.82[EUR][1000 genomes]
rs1912801	0.82[EUR][1000 genomes]
rs1912802	0.80[EUR][1000 genomes]
rs2044694	0.81[EUR][1000 genomes]
rs2044695	0.81[EUR][1000 genomes]
rs2044696	0.81[EUR][1000 genomes]
rs2398880	0.80[ASN][1000 genomes]
rs4284991	0.82[EUR][1000 genomes]
rs4298044	0.81[EUR][1000 genomes]
rs4393915	0.82[EUR][1000 genomes]
rs4579022	0.82[EUR][1000 genomes]
rs4856081	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4856182	0.81[EUR][1000 genomes]
rs56096929	0.85[ASN][1000 genomes]
rs56776054	0.82[EUR][1000 genomes]
rs58154386	0.85[ASN][1000 genomes]
rs59057365	0.85[ASN][1000 genomes]
rs59656418	0.85[ASN][1000 genomes]
rs61271586	0.81[EUR][1000 genomes]
rs66570116	0.85[ASN][1000 genomes]
rs67081249	0.85[ASN][1000 genomes]
rs67544828	0.85[ASN][1000 genomes]
rs6763633	0.81[EUR][1000 genomes]
rs6765506	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6781088	0.81[EUR][1000 genomes]
rs67929491	0.85[ASN][1000 genomes]
rs6801383	0.81[EUR][1000 genomes]
rs6801589	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72954132	0.81[EUR][1000 genomes]
rs72960177	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7612919	0.82[EUR][1000 genomes]
rs7626524	0.82[EUR][1000 genomes]
rs7628767	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7634294	0.82[EUR][1000 genomes]
rs7641035	0.83[ASN][1000 genomes]
rs9682990	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9820695	0.81[EUR][1000 genomes]
rs9823583	0.81[EUR][1000 genomes]
rs9825311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9830752	0.81[EUR][1000 genomes]
rs9852111	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9852579	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864537	0.81[EUR][1000 genomes]
rs9870135	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9870354	0.81[EUR][1000 genomes]
rs9878870	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	esv2757882	chr3:103256253-103421162	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759165	chr3:103256253-103421162	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010818	chr3:103357107-103393929	ZNF genes & repeats Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv877250	chr3:103372647-103450591	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103373600-103375800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:103374400-103375400	Enhancers	HUES64 Cell Line	embryonic stem cell

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