Variant report

Variant	rs1589087
Chromosome Location	chr2:116164398-116164399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11886466	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1402446	1.00[ASN][1000 genomes]
rs1712005	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717040	1.00[ASN][1000 genomes]
rs1717042	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717043	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717044	1.00[ASN][1000 genomes]
rs1717046	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717054	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677291	1.00[ASN][1000 genomes]
rs34796827	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6542262	1.00[ASN][1000 genomes]
rs7561977	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs843383	1.00[ASN][1000 genomes]
rs843390	1.00[ASN][1000 genomes]
rs843392	1.00[ASN][1000 genomes]
rs843393	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843394	1.00[ASN][1000 genomes]
rs843396	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116155600-116170200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:116160200-116164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:116161400-116164600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:116163200-116167600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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