Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10496495	0.93[EUR][1000 genomes]
rs11886466	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402446	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589087	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1712005	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717039	0.93[EUR][1000 genomes]
rs1717040	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717042	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717043	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717044	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717046	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1717054	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677291	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34796827	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720855	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs843383	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843385	0.96[EUR][1000 genomes]
rs843390	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843392	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843393	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843394	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843396	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116172400-116184600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:116173000-116184200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:116181000-116184800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:116182000-116184600	Weak transcription	Fetal Intestine Large	intestine

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