Variant report

Variant	rs10496495
Chromosome Location	chr2:116243444-116243445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11886466	0.91[EUR][1000 genomes]
rs1402446	0.91[EUR][1000 genomes]
rs1712005	0.91[EUR][1000 genomes]
rs1717039	0.86[EUR][1000 genomes]
rs1717040	0.88[EUR][1000 genomes]
rs1717042	0.91[EUR][1000 genomes]
rs1717043	0.91[EUR][1000 genomes]
rs1717044	0.89[EUR][1000 genomes]
rs1717046	0.91[EUR][1000 genomes]
rs1717054	0.91[EUR][1000 genomes]
rs17454234	1.00[ASN][1000 genomes]
rs17454262	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677291	0.87[EUR][1000 genomes]
rs34796827	0.87[EUR][1000 genomes]
rs6542262	0.93[EUR][1000 genomes]
rs6720855	0.85[EUR][1000 genomes]
rs7561977	0.93[EUR][1000 genomes]
rs843383	0.89[EUR][1000 genomes]
rs843385	0.89[EUR][1000 genomes]
rs843390	0.89[EUR][1000 genomes]
rs843392	0.89[EUR][1000 genomes]
rs843393	0.91[EUR][1000 genomes]
rs843394	0.93[EUR][1000 genomes]
rs843396	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116237600-116249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116239200-116246800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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