Variant report
| Variant | rs1717039 |
|---|---|
| Chromosome Location | chr2:116168766-116168767 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10496495 | 0.86[EUR][1000 genomes] |
| rs11886466 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1402446 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1712005 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1717040 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1717042 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1717043 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1717044 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1717046 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1717054 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2677291 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34796827 | 0.88[EUR][1000 genomes] |
| rs6542262 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6720855 | 0.86[EUR][1000 genomes] |
| rs7561977 | 0.93[EUR][1000 genomes] |
| rs843383 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs843385 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs843390 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs843392 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs843393 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs843394 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs843396 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874918 | chr2:116098665-116183946 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv874919 | chr2:116130709-116219686 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116155600-116170200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
