Variant report

Variant	rs1593458
Chromosome Location	chr15:56579962-56579963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11633679	1.00[AMR][1000 genomes]
rs12438627	1.00[AMR][1000 genomes]
rs1711486	1.00[AMR][1000 genomes]
rs1711502	1.00[AMR][1000 genomes]
rs1711520	1.00[AMR][1000 genomes]
rs1715925	1.00[AMR][1000 genomes]
rs2676746	1.00[AMR][1000 genomes]
rs2713927	1.00[AMR][1000 genomes]
rs35226909	1.00[AMR][1000 genomes]
rs933841	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56578800-56581600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56579000-56582200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links