Variant report

Variant	rs2713927
Chromosome Location	chr15:56632733-56632734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11633679	1.00[AMR][1000 genomes]
rs12438627	1.00[AMR][1000 genomes]
rs1593458	1.00[AMR][1000 genomes]
rs1711486	1.00[AMR][1000 genomes]
rs1711502	1.00[AMR][1000 genomes]
rs1711503	1.00[AMR][1000 genomes]
rs1711520	1.00[AMR][1000 genomes]
rs1715925	1.00[AMR][1000 genomes]
rs1715928	1.00[AMR][1000 genomes]
rs1715931	1.00[AMR][1000 genomes]
rs2676746	1.00[AMR][1000 genomes]
rs35226909	1.00[AMR][1000 genomes]
rs933841	1.00[AMR][1000 genomes]
rs938617	1.00[AMR][1000 genomes]
rs938618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56630600-56633200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:56631600-56635400	Enhancers	NHEK	skin
4	chr15:56631800-56635200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:56632000-56634200	Enhancers	Stomach Mucosa	stomach
6	chr15:56632200-56633800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:56632200-56635000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:56632200-56635000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:56632400-56633600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:56632600-56635400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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