Variant report

Variant	rs159419
Chromosome Location	chr6:133714747-133714748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs159411	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs159412	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs159420	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs159421	0.93[CEU][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs159422	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs159427	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs169827	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs211613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs211614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs211618	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs455704	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs465147	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62429386	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs159419	SAMD3	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:133710600-133716400	Weak transcription	Psoas Muscle	Psoas
4	chr6:133711200-133717400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:133712200-133716200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:133712400-133716000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:133713000-133715200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:133713000-133715800	Weak transcription	Fetal Heart	heart
9	chr6:133713200-133715200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:133713200-133716000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:133713600-133717800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:133713800-133716600	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:133713800-133719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:133714200-133717000	Weak transcription	HSMMtube	muscle
15	chr6:133714400-133714800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133714400-133714800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:133714400-133715000	Strong transcription	Hela-S3	cervix
18	chr6:133714400-133717000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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