Variant report
| Variant | rs1595352 |
|---|---|
| Chromosome Location | chr18:28632628-28632629 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:28627929..28630084-chr18:28631591..28634323,2 | MCF-7 | breast: | |
| 2 | chr18:28627031..28630994-chr18:28632365..28635393,5 | K562 | blood: | |
| 3 | chr18:28632383..28635235-chr18:28637146..28639405,2 | K562 | blood: | |
| 4 | chr18:28626792..28630994-chr18:28631279..28635393,6 | K562 | blood: | |
| 5 | chr18:28632383..28635379-chr18:28637119..28639405,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261521 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1595351 | 1.00[AMR][1000 genomes] |
| rs1595353 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16961128 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16961129 | 1.00[AMR][1000 genomes] |
| rs16961139 | 1.00[AFR][1000 genomes] |
| rs16961141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16961142 | 1.00[AFR][1000 genomes] |
| rs16961152 | 1.00[AMR][1000 genomes] |
| rs16961161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16961166 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16961169 | 1.00[AFR][1000 genomes] |
| rs1866102 | 1.00[AFR][1000 genomes] |
| rs1866103 | 1.00[AFR][1000 genomes] |
| rs1893964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7505812 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8087628 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8088208 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8088497 | 1.00[AFR][1000 genomes] |
| rs8089107 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8089246 | 1.00[AMR][1000 genomes] |
| rs8089351 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388313 | chr18:28583296-28693160 | Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv530788 | chr18:28596461-28751891 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv526587 | chr18:28629839-28639548 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28627600-28633600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr18:28631200-28640400 | Weak transcription | Placenta Amnion | Placenta Amnion |
