Variant report

Variant	rs16961128
Chromosome Location	chr18:28628750-28628751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1595351	1.00[AMR][1000 genomes]
rs1595352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1595353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961129	1.00[AMR][1000 genomes]
rs16961139	1.00[AFR][1000 genomes]
rs16961141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961142	1.00[AFR][1000 genomes]
rs16961152	1.00[AMR][1000 genomes]
rs16961161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961169	1.00[AFR][1000 genomes]
rs1866102	1.00[AFR][1000 genomes]
rs1866103	1.00[AFR][1000 genomes]
rs1893964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7505812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8087628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088497	1.00[AFR][1000 genomes]
rs8089107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089246	1.00[AMR][1000 genomes]
rs8089351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28623400-28629800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28626200-28631200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr18:28627400-28628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr18:28627600-28628800	Weak transcription	NHEK	skin
5	chr18:28627600-28633600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr18:28627800-28629000	Weak transcription	HMEC	breast
7	chr18:28628400-28629400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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