Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1003218	0.90[ASN][1000 genomes]
rs1003219	0.86[ASN][1000 genomes]
rs10042020	0.91[ASN][1000 genomes]
rs10066777	0.88[ASN][1000 genomes]
rs10514880	0.85[ASN][1000 genomes]
rs1369286	0.91[ASN][1000 genomes]
rs154144	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs159608	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs159610	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs159622	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890200	0.83[ASN][1000 genomes]
rs16890269	0.91[ASN][1000 genomes]
rs16890276	0.91[ASN][1000 genomes]
rs16890316	0.91[ASN][1000 genomes]
rs173945	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs181924	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs256348	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs256350	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256353	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6859121	0.88[ASN][1000 genomes]
rs6868846	0.97[ASN][1000 genomes]
rs6889984	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018015	chr5:58889470-59532667	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv537766	chr5:58889470-59532667	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv534614	chr5:58962510-59388525	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59160000-59165000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:59160600-59163600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:59160600-59164800	Weak transcription	HSMM	muscle
4	chr5:59160800-59165000	Weak transcription	HSMMtube	muscle
5	chr5:59160800-59189000	Weak transcription	Aorta	Aorta
6	chr5:59161000-59164200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:59161600-59163200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:59161600-59165000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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