Variant report

Variant	rs159724
Chromosome Location	chr5:58236055-58236056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:58232234..58236257-chr5:58237449..58242285,5	K562	blood:
2	chr5:58225563..58228121-chr5:58234226..58236677,2	K562	blood:
3	chr5:58234395..58236257-chr5:58237815..58240439,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10074854	0.89[EUR][1000 genomes]
rs10461657	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1463816	0.89[EUR][1000 genomes]
rs1498612	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1532520	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1553114	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1846369	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1973450	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1973451	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2927661	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2936190	0.82[EUR][1000 genomes]
rs2936199	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2968006	0.82[EUR][1000 genomes]
rs2968013	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2968014	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2968015	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2968017	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968021	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805553	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3805554	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805557	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs412423	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321723	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs457959	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621516	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4629551	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699930	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699931	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4700314	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450496	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6875727	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702523	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7712725	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7713069	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7713345	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7724713	0.89[EUR][1000 genomes]
rs7737685	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58230800-58236200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:58230800-58236200	Weak transcription	HSMM	muscle
3	chr5:58231000-58236200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:58231200-58236200	Weak transcription	Osteobl	bone
5	chr5:58233200-58236400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:58234600-58239200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:58234800-58237800	Weak transcription	K562	blood
8	chr5:58234800-58238800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:58235600-58237000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:58235800-58236400	Weak transcription	Pancreas	Pancrea
11	chr5:58235800-58237000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:58235800-58237600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:58236000-58236200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:58236000-58237200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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