Variant report

Variant	rs702523
Chromosome Location	chr5:58259308-58259309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10074854	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10461657	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463816	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1498612	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1532520	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1553114	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs159724	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846369	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1973450	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1973451	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2927661	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2936190	0.84[EUR][1000 genomes]
rs2936199	0.87[EUR][1000 genomes]
rs2968006	0.84[EUR][1000 genomes]
rs2968013	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2968014	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2968015	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2968017	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968021	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805553	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3805554	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3805556	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805557	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs412423	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4321723	0.87[EUR][1000 genomes]
rs457959	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4621516	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4629551	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699930	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699931	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4700314	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6450496	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6875727	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702519	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7712725	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7713069	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7713345	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7724713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7737685	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58255200-58259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:58255200-58270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:58258800-58261000	Enhancers	A549	lung

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