Variant report

Variant	rs1598861
Chromosome Location	chr4:103486697-103486698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103421988..103424318-chr4:103485489..103487632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260651	Chromatin interaction
ENSG00000109320	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1037999	1.00[LWK][hapmap]
rs4648004	0.84[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1004030	chr4:103419352-103504042	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537203	chr4:103419352-103504042	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103440200-103488200	Weak transcription	Gastric	stomach
2	chr4:103443200-103496000	Weak transcription	A549	lung
3	chr4:103445000-103496600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:103461200-103487800	Weak transcription	Colonic Mucosa	Colon
5	chr4:103461200-103490400	Weak transcription	Dnd41	blood
6	chr4:103461600-103496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:103464600-103488200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:103466800-103498600	Weak transcription	Placenta	Placenta
9	chr4:103467000-103495600	Weak transcription	HepG2	liver
10	chr4:103468800-103490400	Weak transcription	Stomach Mucosa	stomach
11	chr4:103469600-103498000	Weak transcription	Esophagus	oesophagus
12	chr4:103470000-103498000	Weak transcription	Fetal Stomach	stomach
13	chr4:103473400-103524600	Weak transcription	Fetal Brain Male	brain
14	chr4:103473600-103488200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:103473600-103498000	Weak transcription	Aorta	Aorta
16	chr4:103475000-103496600	Weak transcription	HUVEC	blood vessel
17	chr4:103475200-103496400	Weak transcription	Hela-S3	cervix
18	chr4:103476000-103498200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:103476200-103491200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:103476400-103498000	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:103476400-103498200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:103478200-103511800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:103478600-103498200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:103479200-103497800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:103480400-103488000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:103481000-103487600	Weak transcription	Lung	lung
27	chr4:103481200-103487600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:103481600-103489000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:103481800-103488200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:103482000-103488600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:103482200-103487800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:103482200-103488000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:103482200-103495400	Weak transcription	Fetal Thymus	thymus
34	chr4:103482200-103498000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:103482200-103498800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:103482400-103487800	Weak transcription	Brain Substantia Nigra	brain
37	chr4:103482400-103488200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:103482400-103498600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:103482600-103487600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:103482800-103488200	Weak transcription	Adipose Nuclei	Adipose
41	chr4:103482800-103496600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:103482800-103497800	Weak transcription	Fetal Intestine Large	intestine
43	chr4:103482800-103498000	Weak transcription	Fetal Intestine Small	intestine
44	chr4:103482800-103498200	Weak transcription	Brain Anterior Caudate	brain
45	chr4:103483000-103490000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:103483000-103518600	Weak transcription	Small Intestine	intestine
47	chr4:103483200-103487800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr4:103483200-103490600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
49	chr4:103483200-103498000	Weak transcription	Right Ventricle	heart
50	chr4:103483200-103516600	Weak transcription	Brain Angular Gyrus	brain

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