Variant report

Variant	rs4648004
Chromosome Location	chr4:103461107-103461108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103459557..103462461-chr4:103466718..103470732,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1598861	0.84[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1004030	chr4:103419352-103504042	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537203	chr4:103419352-103504042	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103433200-103466000	Weak transcription	Hela-S3	cervix
2	chr4:103440000-103466200	Weak transcription	Aorta	Aorta
3	chr4:103440000-103484800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:103440200-103473200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:103440200-103478600	Weak transcription	Right Ventricle	heart
6	chr4:103440200-103488200	Weak transcription	Gastric	stomach
7	chr4:103441400-103464200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:103441400-103469400	Weak transcription	Ovary	ovary
9	chr4:103441400-103482000	Weak transcription	Spleen	Spleen
10	chr4:103443200-103474200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:103443200-103496000	Weak transcription	A549	lung
12	chr4:103444400-103470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:103444800-103473000	Weak transcription	Small Intestine	intestine
14	chr4:103445000-103496600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:103445200-103470000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:103446200-103462800	Weak transcription	Esophagus	oesophagus
17	chr4:103446200-103462800	Weak transcription	Psoas Muscle	Psoas
18	chr4:103446200-103466000	Weak transcription	Lung	lung
19	chr4:103446200-103469200	Weak transcription	Pancreas	Pancrea
20	chr4:103446200-103469800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:103446600-103466200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:103447200-103474000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:103449000-103467000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr4:103449400-103467000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr4:103449600-103467800	Weak transcription	Fetal Kidney	kidney
26	chr4:103450400-103462600	Weak transcription	Fetal Heart	heart
27	chr4:103451600-103462200	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:103454200-103464200	Weak transcription	Fetal Brain Male	brain
29	chr4:103455400-103474600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr4:103456400-103462600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr4:103456400-103462800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:103456400-103465600	Weak transcription	HUVEC	blood vessel
33	chr4:103456400-103472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:103456400-103473400	Weak transcription	Fetal Lung	lung
35	chr4:103456800-103475600	Weak transcription	Brain Anterior Caudate	brain
36	chr4:103457000-103462800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr4:103457200-103467000	Strong transcription	Primary B cells from cord blood	blood
38	chr4:103457200-103474800	Weak transcription	NHLF	lung
39	chr4:103457600-103462200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:103457800-103462600	Strong transcription	Primary T cells from cord blood	blood
41	chr4:103457800-103471600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:103458000-103461600	Strong transcription	GM12878-XiMat	blood
43	chr4:103458000-103462600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:103458000-103466000	Weak transcription	NH-A	brain
45	chr4:103458000-103475200	Weak transcription	NHDF-Ad	bronchial
46	chr4:103458200-103462600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:103458400-103461200	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:103458400-103461400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr4:103458600-103461200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr4:103458600-103461400	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links