Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1026514	0.86[ASN][1000 genomes]
rs10779436	0.86[ASN][1000 genomes]
rs10863615	0.86[ASN][1000 genomes]
rs10863617	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10863629	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863632	0.96[ASN][1000 genomes]
rs12043747	0.86[ASN][1000 genomes]
rs1380253	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459229	0.86[ASN][1000 genomes]
rs1599091	0.94[ASN][1000 genomes]
rs1858566	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993631	0.86[ASN][1000 genomes]
rs2002536	0.83[AMR][1000 genomes]
rs4846346	0.82[ASN][1000 genomes]
rs4846716	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012024	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61817016	0.81[ASN][1000 genomes]
rs6663387	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6688088	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6699330	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9659064	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9662092	0.96[ASN][1000 genomes]
rs9728318	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221652200-221669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221667800-221668600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:221667800-221668600	Enhancers	Hela-S3	cervix
4	chr1:221668000-221668400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:221668000-221668400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:221668000-221668400	Enhancers	Psoas Muscle	Psoas
7	chr1:221668000-221668400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:221668000-221668400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr1:221668000-221668400	Enhancers	HMEC	breast
10	chr1:221668000-221668400	Enhancers	NHEK	skin

Quick Search: