Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10779436	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863615	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863617	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863629	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10863632	0.86[ASN][1000 genomes]
rs12043747	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12134883	1.00[JPT][hapmap]
rs12561905	0.86[ASN][1000 genomes]
rs12563088	0.82[ASN][1000 genomes]
rs1380253	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1459229	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1599083	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1599091	0.92[ASN][1000 genomes]
rs1858566	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1993631	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2002536	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4846346	0.92[ASN][1000 genomes]
rs4846716	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5012024	0.88[ASN][1000 genomes]
rs61817016	0.90[ASN][1000 genomes]
rs6663387	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701815	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9659064	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9662092	0.86[ASN][1000 genomes]
rs9728318	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221651800-221653000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:221652200-221653400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:221652200-221669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: