Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11082268	0.87[EUR][1000 genomes]
rs12455999	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12606796	0.81[CHB][hapmap]
rs1461719	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1461723	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1870781	0.87[EUR][1000 genomes]
rs1870782	0.87[EUR][1000 genomes]
rs1870783	0.87[EUR][1000 genomes]
rs2335779	0.87[EUR][1000 genomes]
rs34703522	0.87[EUR][1000 genomes]
rs3763494	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4890393	0.86[EUR][1000 genomes]
rs4890394	0.86[EUR][1000 genomes]
rs4890395	0.86[EUR][1000 genomes]
rs59555547	0.83[ASN][1000 genomes]
rs6507469	0.84[EUR][1000 genomes]
rs7228003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7235905	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7238496	0.93[EUR][1000 genomes]
rs73459515	0.83[ASN][1000 genomes]
rs8085753	0.87[EUR][1000 genomes]
rs8089080	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs882289	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv34153	chr18:39398768-39872265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv1059553	chr18:39828781-39872695	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39835800-39836800	Enhancers	Esophagus	oesophagus
2	chr18:39836000-39836400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:39836000-39836800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:39836000-39837200	Enhancers	HMEC	breast

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