Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11082268	0.94[EUR][1000 genomes]
rs12455999	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12967992	0.80[AFR][1000 genomes]
rs1381344	0.83[AFR][1000 genomes]
rs1461719	0.93[EUR][1000 genomes]
rs1461723	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1599478	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1870781	0.93[EUR][1000 genomes]
rs1870782	0.93[EUR][1000 genomes]
rs1870783	0.93[EUR][1000 genomes]
rs2335779	0.94[EUR][1000 genomes]
rs34703522	0.94[EUR][1000 genomes]
rs3763494	0.88[ASN][1000 genomes]
rs4890393	0.94[EUR][1000 genomes]
rs4890394	0.94[EUR][1000 genomes]
rs4890395	0.94[EUR][1000 genomes]
rs6507469	0.93[EUR][1000 genomes]
rs7228003	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7235905	0.92[EUR][1000 genomes]
rs7238496	0.88[EUR][1000 genomes]
rs8085753	0.94[EUR][1000 genomes]
rs882289	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv34153	chr18:39398768-39872265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1063343	chr18:39760943-39898498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv1059553	chr18:39828781-39872695	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39866400-39867800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:39866400-39868600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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