Variant report

Variant	rs1600057
Chromosome Location	chr3:82732916-82732917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1351044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1351045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1351046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531507	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551874	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551875	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551876	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584881	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2085077	0.88[ASN][1000 genomes]
rs2086047	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2603205	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2616377	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4856412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661860	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56131118	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56175435	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56367725	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66879815	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338294	0.88[ASN][1000 genomes]
rs67371696	0.88[ASN][1000 genomes]
rs67775969	0.89[ASN][1000 genomes]
rs7626250	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638071	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7650920	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460734	chr3:82707769-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv590781	chr3:82707769-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	nsv1010803	chr3:82708244-82766788	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv1008386	chr3:82712103-82768690	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	nsv590782	chr3:82715343-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv1005871	chr3:82719273-82767152	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv536607	chr3:82719273-82767152	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82731600-82737200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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