Variant report

Variant	rs2616377
Chromosome Location	chr3:82704093-82704094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1351044	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1351045	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1351046	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1382068	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531507	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1551874	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1551875	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1551876	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1584881	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600057	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2085077	0.97[ASN][1000 genomes]
rs2086047	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2603205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4856412	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55661860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56053058	0.86[ASN][1000 genomes]
rs56131118	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56175435	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56367725	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66879815	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67338294	0.97[ASN][1000 genomes]
rs67371696	0.97[ASN][1000 genomes]
rs67775969	0.99[ASN][1000 genomes]
rs7626250	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638071	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7649892	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7650920	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv980015	chr3:82687963-82707181	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82703800-82704400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:82703800-82704400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:82703800-82704400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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