Variant report

Variant	rs160052
Chromosome Location	chr10:91195080-91195081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10159774	1.00[YRI][hapmap]
rs10509570	1.00[YRI][hapmap]
rs10749607	1.00[YRI][hapmap]
rs10887943	1.00[YRI][hapmap]
rs1888923	1.00[YRI][hapmap]
rs215493	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs303217	1.00[YRI][hapmap]
rs304440	1.00[YRI][hapmap]
rs304449	1.00[YRI][hapmap]
rs304478	1.00[YRI][hapmap]
rs304485	1.00[YRI][hapmap]
rs304495	1.00[YRI][hapmap]
rs304504	1.00[YRI][hapmap]
rs305371	1.00[YRI][hapmap]
rs305375	1.00[YRI][hapmap]
rs305377	1.00[YRI][hapmap]
rs4934471	1.00[YRI][hapmap]
rs4934475	1.00[YRI][hapmap]
rs627524	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs160052	NUDT9P1	cis	parietal	SCAN
rs160052	CH25H	cis	cerebellum	SCAN
rs160052	IFIT5	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
2	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:91192000-91200000	Weak transcription	Aorta	Aorta
4	chr10:91192600-91200000	Weak transcription	Psoas Muscle	Psoas
5	chr10:91193000-91198200	Weak transcription	Left Ventricle	heart
6	chr10:91193600-91200000	Weak transcription	Fetal Heart	heart
7	chr10:91193800-91200000	Weak transcription	Right Ventricle	heart
8	chr10:91194600-91195200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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