Variant report

Variant	rs304495
Chromosome Location	chr10:91145689-91145690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10159774	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509570	1.00[YRI][hapmap]
rs10749605	0.89[CEU][hapmap]
rs10749606	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10749607	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10887943	1.00[YRI][hapmap]
rs160052	1.00[YRI][hapmap]
rs1888923	0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs215493	0.93[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2458877	0.86[EUR][1000 genomes]
rs2484045	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs303170	0.84[EUR][1000 genomes]
rs303172	0.88[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs303174	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs304439	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs304440	0.92[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs304443	0.86[EUR][1000 genomes]
rs304448	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs304449	0.93[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs304451	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs304478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs304483	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs304485	0.93[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs304494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs305371	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs305373	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs305375	0.96[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs305376	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs305377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933504	0.83[AMR][1000 genomes]
rs4934471	0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs4934473	0.86[AMR][1000 genomes]
rs4934475	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs559198	0.80[EUR][1000 genomes]
rs627524	0.96[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6586184	0.82[AMR][1000 genomes]
rs7094510	0.89[CEU][hapmap]
rs7095398	0.88[CEU][hapmap]
rs954439	0.81[CEU][hapmap]
rs975686	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs304495	IFIT5	Cis_1M	lymphoblastoid	RTeQTL
rs304495	IFIT5	cis	Nerve Tibial	GTEx
rs304495	IFIT5	cis	Artery Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain
2	chr10:91141000-91150000	Weak transcription	Fetal Heart	heart
3	chr10:91143400-91146000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:91143400-91146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:91144800-91146600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:91144800-91146600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:91145200-91146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:91145200-91146200	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:91145400-91146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:91145400-91151000	Weak transcription	GM12878-XiMat	blood
11	chr10:91145400-91151800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:91145600-91145800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:91145600-91146000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:91145600-91146400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:91145600-91148800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:91145600-91151600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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