Variant report

Variant	rs4933504
Chromosome Location	chr10:91067595-91067596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91062013..91063553-chr10:91066709..91068779,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CH25H-2	chr10:91066811-91067959	NONHSAT015510

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10159774	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10749605	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10749606	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10749607	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10887943	0.87[ASN][1000 genomes]
rs1888923	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs303217	0.81[AMR][1000 genomes]
rs304478	0.81[AMR][1000 genomes]
rs304494	0.83[AMR][1000 genomes]
rs304495	0.83[AMR][1000 genomes]
rs304504	0.83[AMR][1000 genomes]
rs305371	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs305373	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs305375	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs305376	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs305377	0.86[AMR][1000 genomes]
rs4934471	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934473	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934475	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs627524	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6586184	0.86[AMR][1000 genomes]
rs7094510	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7095398	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs954439	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs975686	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4933504	IFIT5	Cis_1M	lymphoblastoid	RTeQTL
rs4933504	IFIT5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91055800-91070000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:91063200-91074600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:91063200-91076000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:91063400-91068600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:91063400-91069800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:91063400-91072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:91063800-91067800	Weak transcription	Stomach Mucosa	stomach
8	chr10:91063800-91068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:91063800-91069200	Weak transcription	Esophagus	oesophagus
10	chr10:91063800-91069200	Weak transcription	Pancreas	Pancrea
11	chr10:91063800-91069200	Weak transcription	Right Atrium	heart
12	chr10:91063800-91070400	Weak transcription	Fetal Kidney	kidney
13	chr10:91063800-91074200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:91064000-91072800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:91064200-91067800	Weak transcription	Small Intestine	intestine
16	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
17	chr10:91065200-91067600	Enhancers	HSMM	muscle
18	chr10:91065400-91067800	Enhancers	HSMMtube	muscle
19	chr10:91065400-91068800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:91065400-91069800	Strong transcription	Primary B cells from cord blood	blood
21	chr10:91065600-91067800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr10:91065600-91067800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:91065600-91067800	Strong transcription	Fetal Lung	lung
24	chr10:91065600-91068000	Strong transcription	Primary T cells from cord blood	blood
25	chr10:91065600-91068400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:91065600-91069200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:91065600-91069400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:91065600-91069400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:91065600-91069400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr10:91065800-91067600	Strong transcription	Spleen	Spleen
31	chr10:91065800-91067800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:91065800-91067800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr10:91065800-91067800	Strong transcription	Thymus	Thymus
34	chr10:91065800-91068000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:91065800-91068000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:91065800-91069000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:91065800-91069200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:91065800-91069200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:91065800-91069200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr10:91065800-91069400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:91065800-91069400	Strong transcription	Liver	Liver
42	chr10:91065800-91069400	Strong transcription	Left Ventricle	heart
43	chr10:91066000-91067800	Strong transcription	Adipose Nuclei	Adipose
44	chr10:91066000-91068200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:91066200-91067800	Genic enhancers	Placenta	Placenta
46	chr10:91066200-91068000	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:91066200-91069400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:91066200-91070800	Weak transcription	Fetal Intestine Large	intestine
49	chr10:91066400-91067600	Strong transcription	Brain Anterior Caudate	brain
50	chr10:91066400-91068000	Enhancers	Fetal Heart	heart

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