Variant report

Variant	rs7094510
Chromosome Location	chr10:91085659-91085660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10159774	0.82[ASW][hapmap];0.92[CEU][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10749605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749606	0.92[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes]
rs10749607	0.92[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs10887943	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs1888923	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215493	0.82[CEU][hapmap]
rs303217	0.89[CEU][hapmap]
rs304440	0.81[CEU][hapmap]
rs304449	0.82[CEU][hapmap]
rs304478	0.89[CEU][hapmap]
rs304485	0.82[CEU][hapmap]
rs304495	0.89[CEU][hapmap]
rs304504	0.89[CEU][hapmap]
rs305371	0.92[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs305373	0.80[EUR][1000 genomes]
rs305375	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs4933504	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4934471	0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934473	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934475	0.92[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs627524	0.82[ASW][hapmap];0.92[CEU][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.80[TSI][hapmap]
rs7095398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs954439	0.85[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs975686	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7094510	IFIT5	cis	Skin Sun Exposed Lower leg	GTEx
rs7094510	GRID1	cis	parietal	SCAN
rs7094510	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
2	chr10:91082600-91086400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:91083200-91086000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91083800-91087000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91084400-91086600	Weak transcription	Right Atrium	heart
6	chr10:91085400-91087200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:91085600-91085800	Enhancers	Fetal Heart	heart
8	chr10:91085600-91087400	Enhancers	Brain Hippocampus Middle	brain

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