Variant report
| Variant | rs160139 |
|---|---|
| Chromosome Location | chr13:93660845-93660846 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs160265 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs177921 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs308251 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs455401 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs457217 | 0.98[ASN][1000 genomes] |
| rs459591 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs460496 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs464051 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs466432 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs508175 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs509189 | 0.91[EUR][1000 genomes] |
| rs510216 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs522507 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs529389 | 0.88[EUR][1000 genomes] |
| rs531123 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs532077 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs533035 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs533120 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs535640 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7317163 | 0.90[EUR][1000 genomes] |
| rs7322020 | 0.90[EUR][1000 genomes] |
| rs78271 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv900910 | chr13:93582208-93680065 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93659800-93662400 | Weak transcription | HSMMtube | muscle |
