Variant report

Variant	rs1605879
Chromosome Location	chr11:34787833-34787834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10742323	0.91[ASN][1000 genomes]
rs10742324	0.97[ASN][1000 genomes]
rs10768101	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1396884	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1813690	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs474636	0.85[ASN][1000 genomes]
rs4756172	0.80[AMR][1000 genomes]
rs484717	0.87[ASN][1000 genomes]
rs486710	0.87[ASN][1000 genomes]
rs490410	0.87[ASN][1000 genomes]
rs494170	0.87[ASN][1000 genomes]
rs497837	0.85[ASN][1000 genomes]
rs504186	0.87[ASN][1000 genomes]
rs508324	0.82[ASN][1000 genomes]
rs508536	0.87[ASN][1000 genomes]
rs513051	0.85[ASN][1000 genomes]
rs514220	0.87[ASN][1000 genomes]
rs519858	0.85[ASN][1000 genomes]
rs522585	0.87[ASN][1000 genomes]
rs535054	0.87[ASN][1000 genomes]
rs535744	0.87[ASN][1000 genomes]
rs542156	0.87[ASN][1000 genomes]
rs571164	0.87[ASN][1000 genomes]
rs704749	0.87[ASN][1000 genomes]
rs7109762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110293	1.00[ASN][1000 genomes]
rs7129969	0.91[ASN][1000 genomes]
rs7933091	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34780200-34790800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:34780600-34790800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:34780600-34792400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:34787600-34805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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