Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34777504..34779332-chr11:34816777..34819047,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10768101	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1396884	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1605879	0.80[AMR][1000 genomes]
rs484717	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs486710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490410	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs494170	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs504186	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs506444	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs508536	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs513051	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs514220	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs515987	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs522585	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs535054	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs535744	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs542156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563603	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs571164	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs571604	0.93[ASN][1000 genomes]
rs6484732	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704749	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1049551	chr11:34811180-34833640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34811800-34818800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34812800-34817800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:34813800-34818000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:34814200-34820400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:34814600-34817600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:34814800-34817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34815000-34817600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:34815000-34821200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:34815000-34833600	Weak transcription	HepG2	liver
10	chr11:34816800-34817200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:34817000-34817800	Enhancers	HUES64 Cell Line	embryonic stem cell

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