Variant report

Variant	rs1609159
Chromosome Location	chr3:101275902-101275903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17345528	0.95[MKK][hapmap];0.85[YRI][hapmap]
rs3804775	0.95[MKK][hapmap];0.85[YRI][hapmap]
rs4257518	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622940	0.83[ASW][hapmap];0.82[EUR][1000 genomes]
rs9817043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs997739	0.86[MKK][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1609159	SENP7	Cis_1M	lymphoblastoid	RTeQTL
rs1609159	ZBTB11	cis	cerebellum	SCAN
rs1609159	NIT2	cis	parietal	SCAN
rs1609159	FAM55C	cis	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101273000-101277600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:101274600-101276000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:101275400-101276600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:101275600-101276000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:101275800-101276000	Flanking Active TSS	HepG2	liver
7	chr3:101275800-101276200	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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