Variant report

Variant	rs9817043
Chromosome Location	chr3:101281852-101281853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101227907..101233845-chr3:101279162..101282528,7	K562	blood:
2	chr3:101277954..101280498-chr3:101281065..101283887,2	MCF-7	breast:
3	chr3:101279766..101282378-chr3:101395488..101397376,2	MCF-7	breast:
4	chr3:101230728..101233883-chr3:101278974..101284573,9	K562	blood:
5	chr3:101280171..101282152-chr3:101404234..101406900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066422	Chromatin interaction
ENSG00000138468	Chromatin interaction
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1609159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4257518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622940	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9817043	SENP7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101280000-101282000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:101280200-101282200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr3:101280200-101282200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:101280200-101282200	Active TSS	NHLF	lung
5	chr3:101280200-101282400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:101280400-101282000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:101280400-101282200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:101280400-101282200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:101280400-101282400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:101280400-101282600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:101280400-101282800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:101280600-101282000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr3:101280800-101282000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:101281000-101282000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:101281000-101282200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr3:101281200-101282000	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr3:101281200-101282400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:101281400-101282000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:101281400-101282000	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr3:101281400-101282000	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr3:101281400-101282000	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr3:101281400-101282200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr3:101281400-101282400	Enhancers	Spleen	Spleen
24	chr3:101281400-101282600	Enhancers	Small Intestine	intestine
25	chr3:101281400-101292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:101281600-101282000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr3:101281600-101282000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:101281600-101282000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr3:101281600-101282000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:101281600-101282000	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr3:101281600-101282000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:101281600-101282000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr3:101281600-101282000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr3:101281600-101282000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr3:101281600-101282000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr3:101281600-101282000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:101281600-101282000	Flanking Active TSS	Liver	Liver
38	chr3:101281600-101282000	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr3:101281600-101282000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr3:101281600-101282000	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr3:101281600-101282000	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr3:101281600-101282000	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr3:101281600-101282000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:101281600-101282000	Flanking Active TSS	Fetal Brain Female	brain
45	chr3:101281600-101282000	Flanking Active TSS	Fetal Heart	heart
46	chr3:101281600-101282000	Flanking Active TSS	Fetal Intestine Small	intestine
47	chr3:101281600-101282000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr3:101281600-101282000	Flanking Active TSS	Fetal Lung	lung
49	chr3:101281600-101282000	Active TSS	Fetal Muscle Trunk	muscle
50	chr3:101281600-101282000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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