Variant report

Variant	rs1610737
Chromosome Location	chr6:29720162-29720163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:67)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:67 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29719953-29721132	GM18505	blood:	n/a	n/a
2	ZNF263	chr6:29719869-29721144	HEK293-T-REx	kidney:	n/a	chr6:29719945-29719954
3	POLR2A	chr6:29720057-29721137	GM12891	blood:	n/a	n/a
4	GATA1	chr6:29719758-29721098	PBDE	blood:	n/a	n/a
5	POLR2A	chr6:29720074-29721167	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr6:29720026-29721255	K562	blood:	n/a	n/a
7	POLR2A	chr6:29719885-29721146	GM12892	blood:	n/a	n/a
8	TAF1	chr6:29720149-29720541	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:29720012-29721177	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr6:29719941-29721141	K562	blood:	n/a	n/a
11	POLR2A	chr6:29720161-29720274	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:29720161-29721197	U87	brain:	n/a	n/a
13	TBP	chr6:29720101-29720410	GM12878	blood:	n/a	n/a
14	TBP	chr6:29720067-29721142	K562	blood:	n/a	n/a
15	POLR2A	chr6:29720057-29721136	GM18526	blood:	n/a	n/a
16	POLR2A	chr6:29720143-29721148	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr6:29719963-29721094	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:29720136-29720611	GM12878	blood:	n/a	n/a
19	BRCA1	chr6:29720161-29720231	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:29720031-29720788	GM12878	blood:	n/a	n/a
21	POLR2A	chr6:29720128-29721183	K562	blood:	n/a	n/a
22	SIN3A	chr6:29720068-29721172	H1-hESC	embryonic stem cell:	n/a	chr6:29720799-29720808
23	ZNF143	chr6:29720103-29720183	H1-hESC	embryonic stem cell:	n/a	n/a
24	RUNX3	chr6:29720049-29721229	GM12878	blood:	n/a	n/a
25	EBF1	chr6:29719915-29720444	GM12878	blood:	n/a	chr6:29720148-29720159
26	POLR2A	chr6:29720037-29721112	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:29719978-29721103	K562	blood:	n/a	n/a
28	RFX5	chr6:29719885-29721275	IMR90	lung:	n/a	n/a
29	HA-E2F1	chr6:29720026-29721044	MCF-7	breast:	n/a	chr6:29720335-29720346 chr6:29720335-29720346 chr6:29720335-29720346
30	POLR2A	chr6:29720052-29721218	HUVEC	blood vessel:	n/a	n/a
31	EBF1	chr6:29720012-29720246	GM12878	blood:	n/a	chr6:29720148-29720159
32	POLR2A	chr6:29719914-29721119	GM12878	blood:	n/a	n/a
33	HEY1	chr6:29720105-29721125	K562	blood:	n/a	chr6:29720413-29720428
34	CTCF	chr6:29720160-29720310	GM12873	blood:	n/a	n/a
35	MTA3	chr6:29719890-29721236	GM12878	blood:	n/a	n/a
36	POLR2A	chr6:29719988-29721080	PBDE	blood:	n/a	n/a
37	RUNX3	chr6:29720082-29721169	GM12878	blood:	n/a	n/a
38	RELA	chr6:29720070-29721181	GM18951	blood:	n/a	n/a
39	PML	chr6:29720147-29721126	K562	blood:	n/a	n/a
40	RELA	chr6:29719900-29721174	GM15510	blood:	n/a	n/a
41	JUN	chr6:29719978-29721384	K562	blood:	n/a	chr6:29720854-29720862
42	HEY1	chr6:29720100-29721082	K562	blood:	n/a	chr6:29720413-29720428
43	POLR2A	chr6:29720054-29720669	GM12892	blood:	n/a	n/a
44	POLR2A	chr6:29720033-29721165	GM15510	blood:	n/a	n/a
45	POLR2A	chr6:29720048-29721161	GM12892	blood:	n/a	n/a
46	POU2F2	chr6:29720156-29721128	GM12878	blood:	n/a	chr6:29720603-29720616
47	ELF1	chr6:29719981-29721163	GM12878	blood:	n/a	n/a
48	MAX	chr6:29720118-29721127	GM12878	blood:	n/a	chr6:29720727-29720737
49	HCFC1	chr6:29720117-29721295	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr6:29720109-29721112	GM19193	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29720137-29720187	SK-N-SH	brain:	n/a
2	chr6:29720137-29720187	GM19239	blood:	n/a
3	chr6:29720137-29720187	PrEC	prostate:	n/a
4	chr6:29720137-29720187	BE2_C	brain:	n/a
5	chr6:29720137-29720187	HNPCEpiC	eye:	n/a
6	chr6:29720137-29720187	AG04450	lung:	fetal
7	chr6:29720137-29720187	Caco-2	colon:	n/a
8	chr6:29720137-29720187	AG09309	skin:	n/a
9	chr6:29720137-29720187	NHBE	bronchial:	n/a
10	chr6:29720137-29720187	H1-hESC	embryonic stem cell:	embryo
11	chr6:29720137-29720187	HepG2	liver:	n/a
12	chr6:29720137-29720187	GM12878	blood:	n/a
13	chr6:29720137-29720187	AG09319	gingival:	n/a
14	chr6:29720137-29720187	NHDF-neo	bronchial:	n/a
15	chr6:29720137-29720187	SK-N-SH_RA	brain:	n/a
16	chr6:29720137-29720187	Hepatocyte	liver:	n/a
17	chr6:29720137-29720187	HCF	heart:	n/a
18	chr6:29720137-29720187	GM12891	blood:	n/a
19	chr6:29720137-29720187	NT2-D1	testis:	n/a
20	chr6:29720137-29720187	PFSK-1	brain:	n/a
21	chr6:29720137-29720187	SAEC	small airway:	n/a
22	chr6:29720137-29720187	PANC-1	pancreas:	n/a
23	chr6:29720137-29720187	HCPEpiC	choroid plexus:	n/a
24	chr6:29720137-29720187	HCM	heart:	n/a
25	chr6:29720137-29720187	HCT-116	colon:	n/a
26	chr6:29720137-29720187	HAEpiC	amniotic membrane:	n/a
27	chr6:29720137-29720187	HUVEC	blood vessel:	n/a
28	chr6:29720137-29720187	HL-60	blood:	n/a
29	chr6:29720137-29720187	HEEpiC	esophagus:	n/a
30	chr6:29720137-29720187	AG04449	skin:	fetal
31	chr6:29720137-29720187	T-47D	breast:	n/a
32	chr6:29720137-29720187	Hela-S3	cervix:	n/a
33	chr6:29720137-29720187	ovcar-3	ovarian:	n/a
34	chr6:29720137-29720187	IMR90	lung:	fetal
35	chr6:29720137-29720187	HIPEpiC	eye:	n/a
36	chr6:29720137-29720187	ECC-1	luminal epithelium:	n/a
37	chr6:29720137-29720187	BJ	skin:	n/a
38	chr6:29720137-29720187	CMK	blood:	n/a
39	chr6:29720137-29720187	GM06990	blood:	n/a
40	chr6:29720137-29720187	SK-N-MC	brain:	n/a
41	chr6:29720137-29720187	HEK293	kidney:	embryo
42	chr6:29720137-29720187	HRE	kidney:	n/a
43	chr6:29720137-29720187	ProgFib	skin:	n/a
44	chr6:29720137-29720187	HPAEpiC	pulmonary alveolar:	n/a
45	chr6:29720137-29720187	K562	blood:	n/a
46	chr6:29720137-29720187	MCF-7	breast:	n/a
47	chr6:29720137-29720187	HRPEpiC	eye:	n/a
48	chr6:29720137-29720187	HRCEpiC	kidney:	n/a
49	chr6:29720137-29720187	HMEC	breast:	n/a
50	chr6:29720137-29720187	Jurkat	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78730375..78731065-chr6:29720140..29720963,2	Hela-S3	cervix:
2	chr6:29719431..29722230-chr6:29728984..29731849,2	MCF-7	breast:
3	chr6:29720140..29720818-chr6:31462249..31463235,2	Hela-S3	cervix:
4	chr6:29716316..29718223-chr6:29719581..29721724,2	MCF-7	breast:

No data

Variant related genes	Relation type
HLA-F-AS1	TF binding region
MICE	TF binding region
ENSG00000272236	TF binding region
IFITM4P	TF binding region
IFITM4P	CpG island
HLA-F-AS1	CpG island
ENSG00000272236	CpG island
MICE	CpG island
ENSG00000204516	Chromatin interaction
ENSG00000273340	Chromatin interaction
ENSG00000214922	Chromatin interaction
ENSG00000270896	Chromatin interaction
ENSG00000136381	Chromatin interaction
ENSG00000199290	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1059174	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474610	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1610600	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610603	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610604	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610605	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610607	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610613	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610623	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1610626	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610627	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610630	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610632	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610727	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1610728	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610738	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610740	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1611278	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1611279	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611292	0.82[EUR][1000 genomes]
rs1611293	0.80[EUR][1000 genomes]
rs1611294	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611297	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611300	0.85[EUR][1000 genomes]
rs1611352	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1625607	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1625636	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626636	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632447	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632956	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632958	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632959	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633012	0.83[EUR][1000 genomes]
rs1633025	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633026	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633036	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633038	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633042	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633043	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633045	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633046	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633048	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633049	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633050	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633051	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633052	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633055	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633056	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633057	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633058	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633060	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633061	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633062	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633064	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633069	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633070	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633071	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633074	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633076	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633091	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736910	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736911	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1736914	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736916	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736921	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737008	0.83[EUR][1000 genomes]
rs1737022	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1737039	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1737058	0.89[EUR][1000 genomes]
rs1737060	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1737065	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737066	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737067	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1737068	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737070	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737071	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737073	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737074	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737075	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737079	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1737081	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737084	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737087	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248693	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735050	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3117297	0.93[ASN][1000 genomes]
rs3117303	0.93[ASN][1000 genomes]
rs3129081	0.93[ASN][1000 genomes]
rs3129184	0.83[EUR][1000 genomes]
rs3130252	0.93[ASN][1000 genomes]
rs3131858	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131862	0.93[ASN][1000 genomes]
rs3135050	0.93[ASN][1000 genomes]
rs6933762	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733840	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733841	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909717	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909723	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909724	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs909725	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs909726	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909727	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909732	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909735	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9258243	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs932338	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932341	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv883534	chr6:29708222-29724310	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29717600-29720200	Weak transcription	Gastric	stomach
2	chr6:29717800-29720200	Weak transcription	Brain Substantia Nigra	brain
3	chr6:29717800-29720400	Weak transcription	Fetal Heart	heart
4	chr6:29717800-29721200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:29719200-29721200	Active TSS	GM12878-XiMat	blood
6	chr6:29719400-29721200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:29719400-29721200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:29719600-29720200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:29719600-29720200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:29719600-29720200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:29719600-29720200	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:29719600-29720200	Flanking Active TSS	HUVEC	blood vessel
13	chr6:29719600-29720200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:29719600-29720400	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr6:29719600-29721000	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr6:29719600-29721200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr6:29719600-29721200	Active TSS	NHLF	lung
18	chr6:29719600-29721400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:29719600-29721400	Active TSS	HSMM	muscle
20	chr6:29719600-29721400	Active TSS	NHDF-Ad	bronchial
21	chr6:29719600-29721800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:29719800-29720200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:29719800-29720200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:29719800-29720200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr6:29719800-29720200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:29719800-29720200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:29719800-29720200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:29719800-29720200	Flanking Active TSS	Liver	Liver
29	chr6:29719800-29720200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr6:29719800-29720200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr6:29719800-29720200	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr6:29719800-29720200	Flanking Active TSS	Right Ventricle	heart
33	chr6:29719800-29720200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr6:29719800-29720200	Enhancers	Stomach Mucosa	stomach
35	chr6:29719800-29720200	Flanking Active TSS	HMEC	breast
36	chr6:29719800-29720200	Flanking Active TSS	K562	blood
37	chr6:29719800-29720400	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr6:29719800-29720400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr6:29719800-29720400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:29719800-29720400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:29719800-29720400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr6:29719800-29720400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:29719800-29720400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr6:29719800-29720400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr6:29719800-29720400	Flanking Active TSS	NHEK	skin
46	chr6:29719800-29720600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:29719800-29720600	Active TSS	Esophagus	oesophagus
48	chr6:29719800-29721000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
49	chr6:29719800-29721000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:29719800-29721000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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