Variant report

Variant	rs1611292
Chromosome Location	chr6:29721627-29721628
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29710119..29712623-chr6:29721345..29723379,2	MCF-7	breast:
2	chr6:29719431..29722230-chr6:29728984..29731849,2	MCF-7	breast:
3	chr6:29709930..29711722-chr6:29720449..29722464,2	K562	blood:
4	chr6:29721433..29724421-chr6:29794290..29797232,2	MCF-7	breast:
5	chr6:29716316..29718223-chr6:29719581..29721724,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273340	Chromatin interaction
ENSG00000270896	Chromatin interaction
ENSG00000229142	Chromatin interaction
ENSG00000214922	Chromatin interaction
ENSG00000204632	Chromatin interaction
ENSG00000199290	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1474610	0.83[EUR][1000 genomes]
rs1610623	0.81[EUR][1000 genomes]
rs1610626	0.81[EUR][1000 genomes]
rs1610627	0.81[EUR][1000 genomes]
rs1610630	0.81[EUR][1000 genomes]
rs1610632	0.81[EUR][1000 genomes]
rs1610728	0.81[EUR][1000 genomes]
rs1610737	0.82[EUR][1000 genomes]
rs1610738	0.81[EUR][1000 genomes]
rs1611278	0.81[EUR][1000 genomes]
rs1611279	0.81[EUR][1000 genomes]
rs1611293	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611294	0.81[EUR][1000 genomes]
rs1611297	0.81[EUR][1000 genomes]
rs1625607	0.81[EUR][1000 genomes]
rs1625636	0.81[EUR][1000 genomes]
rs1626636	0.81[EUR][1000 genomes]
rs1632958	0.86[EUR][1000 genomes]
rs1633012	0.85[EUR][1000 genomes]
rs1633025	0.86[EUR][1000 genomes]
rs1633026	0.86[EUR][1000 genomes]
rs1633036	0.86[EUR][1000 genomes]
rs1633038	0.86[EUR][1000 genomes]
rs1633043	0.88[EUR][1000 genomes]
rs1633045	0.81[EUR][1000 genomes]
rs1633046	0.81[EUR][1000 genomes]
rs1633048	0.81[EUR][1000 genomes]
rs1633049	0.81[EUR][1000 genomes]
rs1633050	0.81[EUR][1000 genomes]
rs1633051	0.81[EUR][1000 genomes]
rs1633052	0.81[EUR][1000 genomes]
rs1633055	0.81[EUR][1000 genomes]
rs1633056	0.81[EUR][1000 genomes]
rs1633057	0.81[EUR][1000 genomes]
rs1633058	0.81[EUR][1000 genomes]
rs1633060	0.81[EUR][1000 genomes]
rs1633061	0.81[EUR][1000 genomes]
rs1633062	0.81[EUR][1000 genomes]
rs1633064	0.81[EUR][1000 genomes]
rs1633074	0.84[EUR][1000 genomes]
rs1633076	0.81[EUR][1000 genomes]
rs1736911	0.88[EUR][1000 genomes]
rs1736995	0.82[EUR][1000 genomes]
rs1737008	0.85[EUR][1000 genomes]
rs1737022	0.86[EUR][1000 genomes]
rs1737039	0.86[EUR][1000 genomes]
rs1737058	0.90[EUR][1000 genomes]
rs1737065	0.81[EUR][1000 genomes]
rs1737066	0.81[EUR][1000 genomes]
rs1737068	0.81[EUR][1000 genomes]
rs1737070	0.81[EUR][1000 genomes]
rs1737071	0.91[EUR][1000 genomes]
rs1737073	0.81[EUR][1000 genomes]
rs1737074	0.81[EUR][1000 genomes]
rs1737075	0.81[EUR][1000 genomes]
rs1737079	0.81[EUR][1000 genomes]
rs1737081	0.81[EUR][1000 genomes]
rs1737084	0.81[EUR][1000 genomes]
rs1737087	0.81[EUR][1000 genomes]
rs2735050	0.81[EUR][1000 genomes]
rs3129184	0.85[EUR][1000 genomes]
rs3131858	0.81[EUR][1000 genomes]
rs6933762	0.81[EUR][1000 genomes]
rs733840	0.81[EUR][1000 genomes]
rs733841	0.81[EUR][1000 genomes]
rs909723	0.81[EUR][1000 genomes]
rs909725	0.81[EUR][1000 genomes]
rs909726	0.81[EUR][1000 genomes]
rs909727	0.81[EUR][1000 genomes]
rs9258243	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv883534	chr6:29708222-29724310	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29719600-29721800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:29721000-29721800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:29721000-29721800	Enhancers	Duodenum Mucosa	Duodenum
4	chr6:29721000-29723000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:29721000-29723200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:29721000-29723200	Weak transcription	Spleen	Spleen
7	chr6:29721000-29724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:29721000-29725200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:29721200-29721800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:29721200-29721800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:29721200-29721800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:29721200-29721800	Enhancers	Colon Smooth Muscle	Colon
13	chr6:29721200-29721800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:29721200-29723200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:29721200-29723200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:29721200-29723200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:29721200-29723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:29721400-29721800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:29721400-29721800	Bivalent Enhancer	Dnd41	blood
20	chr6:29721400-29721800	Flanking Active TSS	HMEC	breast
21	chr6:29721400-29723000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:29721400-29724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:29721600-29721800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:29721600-29721800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:29721600-29721800	Active TSS	GM12878-XiMat	blood
26	chr6:29721600-29721800	Enhancers	Hela-S3	cervix
27	chr6:29721600-29721800	Active TSS	NHEK	skin
28	chr6:29721600-29723000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:29721600-29723000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:29721600-29724600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:29721600-29725400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:29721600-29729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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