Variant report

Variant	rs1612071
Chromosome Location	chr11:73732906-73732907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73725089..73727060-chr11:73732436..73734967,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12275089	0.86[AMR][1000 genomes]
rs12280063	0.86[AMR][1000 genomes]
rs1320428	0.86[AMR][1000 genomes]
rs1320429	0.86[AMR][1000 genomes]
rs1618727	0.86[AMR][1000 genomes]
rs1685337	0.86[AMR][1000 genomes]
rs1726753	0.86[AMR][1000 genomes]
rs1726754	0.86[AMR][1000 genomes]
rs1726757	0.86[AMR][1000 genomes]
rs1726760	0.86[AMR][1000 genomes]
rs1726765	0.86[AMR][1000 genomes]
rs1726767	0.86[AMR][1000 genomes]
rs1726768	0.86[AMR][1000 genomes]
rs699140	0.86[AMR][1000 genomes]
rs826080	0.86[AMR][1000 genomes]
rs826091	0.86[AMR][1000 genomes]
rs941250	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv976527	chr11:73728292-73738902	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
2	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
3	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:73712800-73743400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73720000-73743400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:73721800-73743000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:73722000-73744000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73722200-73767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:73724800-73746800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:73725200-73736400	Weak transcription	NHEK	skin
12	chr11:73725400-73740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:73728000-73741200	Weak transcription	Aorta	Aorta
14	chr11:73728000-73755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73728400-73738400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:73728600-73738600	Weak transcription	Dnd41	blood
17	chr11:73728800-73734600	Genic enhancers	Placenta	Placenta
18	chr11:73728800-73736800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:73729000-73733200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:73729000-73742000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:73729200-73736600	Weak transcription	A549	lung
22	chr11:73729200-73740000	Weak transcription	Fetal Lung	lung
23	chr11:73729800-73733800	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:73729800-73733800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:73730400-73737800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:73730400-73738400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:73730600-73733200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:73730600-73733800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:73730600-73734000	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:73730600-73735800	Weak transcription	NHDF-Ad	bronchial
31	chr11:73730600-73736200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:73730600-73741400	Weak transcription	Hela-S3	cervix
33	chr11:73730600-73743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:73730800-73735600	Weak transcription	K562	blood
35	chr11:73730800-73742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:73730800-73745400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:73730800-73800800	Weak transcription	Fetal Heart	heart
38	chr11:73731000-73735800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:73731000-73742600	Weak transcription	Esophagus	oesophagus
40	chr11:73731200-73733200	Weak transcription	Brain Anterior Caudate	brain
41	chr11:73731200-73733800	Weak transcription	Fetal Intestine Large	intestine
42	chr11:73731200-73735400	Weak transcription	NHLF	lung
43	chr11:73731200-73736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:73731200-73736800	Weak transcription	Ovary	ovary
45	chr11:73731200-73743800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:73731200-73744800	Weak transcription	HepG2	liver
47	chr11:73731400-73733200	Weak transcription	Brain Germinal Matrix	brain
48	chr11:73731400-73733800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:73731400-73734000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:73731400-73735600	Weak transcription	Osteobl	bone

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