Variant report

Variant	rs1612985
Chromosome Location	chr3:59739755-59739756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61210497	1.00[EUR][1000 genomes]
rs62239699	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59733200-59740200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:59734200-59739800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:59735400-59739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:59735600-59739800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:59735800-59742400	Weak transcription	Ovary	ovary
6	chr3:59736400-59739800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:59737400-59740000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:59737600-59741600	Enhancers	Fetal Thymus	thymus
9	chr3:59738000-59739800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:59738000-59740200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
12	chr3:59738400-59742200	Enhancers	Dnd41	blood
13	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr3:59738600-59740000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:59738600-59741000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:59738800-59740400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:59738800-59741600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr3:59739400-59740200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr3:59739400-59740400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:59739400-59740600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:59739400-59740600	Enhancers	Primary hematopoietic stem cells	blood
25	chr3:59739400-59741000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:59739400-59741400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:59739600-59740200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr3:59739600-59740400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr3:59739600-59741000	Enhancers	NHDF-Ad	bronchial
30	chr3:59739600-59741400	Enhancers	Thymus	Thymus

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