Variant report

Variant	rs62239699
Chromosome Location	chr3:59745188-59745189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1612985	0.94[EUR][1000 genomes]
rs2605436	1.00[ASN][1000 genomes]
rs61210497	0.94[EUR][1000 genomes]
rs6791049	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738200-59747000	Enhancers	Primary T cells from cord blood	blood
2	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:59739000-59747200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:59740200-59746000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:59741400-59746600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:59742600-59745200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:59743200-59747000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:59743400-59748400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:59743400-59750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:59744000-59745600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:59744400-59745400	Enhancers	Osteobl	bone
16	chr3:59744400-59746200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:59744400-59746800	Enhancers	Fetal Thymus	thymus
18	chr3:59744600-59745200	Enhancers	Dnd41	blood
19	chr3:59744600-59745400	Enhancers	Fetal Intestine Large	intestine
20	chr3:59744600-59745600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:59744600-59746200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:59744600-59746400	Enhancers	Stomach Mucosa	stomach
23	chr3:59744800-59745600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:59744800-59745600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:59744800-59745600	Enhancers	Fetal Lung	lung
26	chr3:59744800-59745600	Enhancers	Right Atrium	heart
27	chr3:59744800-59745600	Enhancers	HMEC	breast
28	chr3:59744800-59745800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:59744800-59746000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:59745000-59745400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr3:59745000-59745400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr3:59745000-59745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:59745000-59745600	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:59745000-59745600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr3:59745000-59745600	Enhancers	Small Intestine	intestine
36	chr3:59745000-59746200	Enhancers	Fetal Intestine Small	intestine
37	chr3:59745000-59746200	Weak transcription	Thymus	Thymus
38	chr3:59745000-59746200	Enhancers	HepG2	liver
39	chr3:59745000-59748800	Weak transcription	NHDF-Ad	bronchial

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