Variant report

Variant	rs1614808
Chromosome Location	chr8:107514061-107514062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1453226	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1597923	0.83[EUR][1000 genomes]
rs1670396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2023127	0.81[EUR][1000 genomes]
rs2167801	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444306	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2510818	0.83[EUR][1000 genomes]
rs2510819	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs921628	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107510800-107514400	Enhancers	Brain Hippocampus Middle	brain
2	chr8:107511600-107514400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:107511600-107514400	Enhancers	NHDF-Ad	bronchial
4	chr8:107511600-107514400	Enhancers	Osteobl	bone
5	chr8:107511600-107514600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:107512200-107514600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
8	chr8:107512600-107517800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:107513000-107514400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:107513000-107514600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:107513000-107514800	Enhancers	Brain Anterior Caudate	brain
12	chr8:107513200-107514200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:107513200-107514200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:107513200-107514200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:107513200-107514600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:107513400-107514200	Enhancers	HUVEC	blood vessel
17	chr8:107513400-107514400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:107513400-107514400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:107513400-107514400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:107513400-107514600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr8:107513400-107514600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr8:107513400-107514600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:107513600-107517000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:107513600-107526200	Weak transcription	Brain Angular Gyrus	brain
25	chr8:107513800-107514600	Enhancers	Primary hematopoietic stem cells	blood
26	chr8:107513800-107515400	Weak transcription	Brain Substantia Nigra	brain
27	chr8:107513800-107515600	Weak transcription	Pancreas	Pancrea
28	chr8:107513800-107515800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:107513800-107525000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:107514000-107514600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:107514000-107514600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:107514000-107515400	Weak transcription	HMEC	breast
33	chr8:107514000-107515600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:107514000-107516600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:107514000-107519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:107514000-107525600	Weak transcription	H9 Cell Line	embryonic stem cell

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