Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10109171	0.80[ASN][1000 genomes]
rs13271329	0.80[ASN][1000 genomes]
rs1453226	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1597923	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614808	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1670380	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1670381	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1670396	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2023127	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2167801	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2186399	0.80[ASN][1000 genomes]
rs2186400	0.80[ASN][1000 genomes]
rs2510818	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4409376	0.80[ASN][1000 genomes]
rs4446708	0.80[ASN][1000 genomes]
rs4585724	0.80[ASN][1000 genomes]
rs6469068	0.80[ASN][1000 genomes]
rs6469069	0.80[ASN][1000 genomes]
rs6996540	0.80[ASN][1000 genomes]
rs6996816	0.80[ASN][1000 genomes]
rs7012963	0.80[ASN][1000 genomes]
rs7017001	0.80[ASN][1000 genomes]
rs7836182	0.80[ASN][1000 genomes]
rs921628	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297383	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107475400-107511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:107478200-107495000	Weak transcription	NHDF-Ad	bronchial
3	chr8:107481400-107494200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107488600-107489600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:107488800-107489600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107488800-107489600	Enhancers	Cortex derived primary cultured neurospheres	brain

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