Variant report

Variant	rs161741
Chromosome Location	chr5:98297990-98297991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11242525	1.00[AMR][1000 genomes]
rs162151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs325218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57031864	1.00[AMR][1000 genomes]
rs60480489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv537819	chr5:98253348-98299646	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98278600-98299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:98279400-98298400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:98297200-98298000	Weak transcription	K562	blood
4	chr5:98297200-98298200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:98297200-98298200	Weak transcription	Fetal Thymus	thymus
6	chr5:98297200-98299400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:98297200-98299800	Enhancers	Thymus	Thymus
8	chr5:98297400-98300800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:98297800-98298400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:98297800-98299600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr5:98297800-98299800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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