Variant report

Variant	rs162151
Chromosome Location	chr5:98299918-98299919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11242525	1.00[AMR][1000 genomes]
rs161741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs325218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57031864	1.00[AMR][1000 genomes]
rs60480489	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98297400-98300800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr5:98298200-98300200	Enhancers	Fetal Thymus	thymus
3	chr5:98298400-98301600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:98299400-98300000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:98299400-98300600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:98299600-98300000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:98299600-98300000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:98299600-98300400	Flanking Active TSS	K562	blood
9	chr5:98299800-98300000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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