Variant report

Variant	rs1619837
Chromosome Location	chr14:84359446-84359447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10148908	0.83[ASN][1000 genomes]
rs11159614	0.82[ASN][1000 genomes]
rs1698247	0.83[ASN][1000 genomes]
rs1698250	0.84[ASN][1000 genomes]
rs1698259	0.81[YRI][hapmap]
rs1705652	0.83[ASN][1000 genomes]
rs1705660	0.84[ASN][1000 genomes]
rs1756299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899843	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431019	chr14:84303525-84365447	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84354200-84359600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:84354400-84362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:84359400-84359600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:84359400-84359800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:84359400-84363200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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