Variant report

Variant	rs1621500
Chromosome Location	chr6:37560852-37560853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1738442	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1738443	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1738444	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1776441	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2746439	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2776900	0.89[ASN][1000 genomes]
rs2797787	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9394440	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470635	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37556600-37561800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:37556600-37562000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:37556600-37567600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:37558600-37562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37559800-37561800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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