Variant report

Variant	rs9394440
Chromosome Location	chr6:37555733-37555734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37544738..37547399-chr6:37555553..37558096,2	MCF-7	breast:
2	chr6:37549451..37550961-chr6:37553159..37556146,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1621500	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1738442	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1738443	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738444	0.83[EUR][1000 genomes]
rs1738457	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1738458	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1776441	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012000	0.87[ASN][1000 genomes]
rs2395675	0.88[ASN][1000 genomes]
rs2395676	0.88[ASN][1000 genomes]
rs2395677	0.88[ASN][1000 genomes]
rs2746439	0.85[CEU][hapmap]
rs2797787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894413	0.88[ASN][1000 genomes]
rs6458004	0.89[ASN][1000 genomes]
rs6903811	0.81[ASN][1000 genomes]
rs6903990	0.84[ASN][1000 genomes]
rs6904374	0.84[ASN][1000 genomes]
rs6923753	0.84[ASN][1000 genomes]
rs7749225	0.89[ASN][1000 genomes]
rs7753616	0.88[ASN][1000 genomes]
rs7765821	0.83[ASN][1000 genomes]
rs7774871	0.88[ASN][1000 genomes]
rs9470636	0.88[ASN][1000 genomes]
rs9470637	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37550200-37556000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:37550400-37556400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:37550800-37556200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:37552000-37556800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37552600-37558600	Enhancers	Fetal Brain Male	brain
7	chr6:37553400-37559400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37554200-37556000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:37554400-37555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:37554800-37556400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:37555000-37556600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:37555000-37556800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:37555200-37556600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:37555200-37556800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37555400-37556000	Enhancers	Fetal Brain Female	brain
16	chr6:37555400-37556600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:37555400-37556600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:37555400-37556800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:37555400-37556800	Enhancers	Brain Germinal Matrix	brain
20	chr6:37555600-37555800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:37555600-37556200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:37555600-37556600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:37555600-37556600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr6:37555600-37556600	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links