Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1738442	0.80[ASN][1000 genomes]
rs1738443	0.83[ASN][1000 genomes]
rs1776441	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2012000	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2395675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395676	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395677	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2797787	0.83[ASN][1000 genomes]
rs2894413	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6458004	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903811	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903990	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904374	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6923753	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749225	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753616	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7774871	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394440	0.83[ASN][1000 genomes]
rs9470636	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470637	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37567200-37568400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr6:37567200-37568800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:37567200-37569000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:37567400-37568600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:37567400-37568600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:37567400-37569000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:37567600-37569000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:37567600-37569200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:37567800-37568600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:37567800-37568600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:37567800-37568800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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