Variant report

Variant	rs162188
Chromosome Location	chr6:134227223-134227224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134214451..134216524-chr6:134225200..134227835,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1208276	0.89[CEU][hapmap]
rs1208277	0.89[CEU][hapmap]
rs1414669	0.81[EUR][1000 genomes]
rs149418	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572425	1.00[CEU][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162183	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162184	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162186	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162187	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327431	1.00[CEU][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2327433	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2327434	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs328455	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328456	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4896011	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896012	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569916	1.00[CEU][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932322	0.87[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693702	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766238	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774514	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9389113	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs9389114	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9402546	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9402547	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134223600-134227600	Weak transcription	Fetal Stomach	stomach
2	chr6:134227200-134227600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
3	chr6:134227200-134227600	Bivalent Enhancer	HSMM	muscle
4	chr6:134227200-134227600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
5	chr6:134227200-134227800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:134227200-134227800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
7	chr6:134227200-134228000	Enhancers	Fetal Intestine Large	intestine
8	chr6:134227200-134230000	Strong transcription	Ovary	ovary

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