Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98026719..98030157-chr9:98032285..98035514,3	MCF-7	breast:
2	chr9:98034193..98037006-chr9:98038533..98040455,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs173339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242448	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2655055	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2765817	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356660	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356661	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs356662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356663	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356671	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356685	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs356686	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780560	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs400727	1.00[EUR][1000 genomes]
rs420089	0.80[EUR][1000 genomes]
rs4743989	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744440	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs475413	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs648615	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs651009	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9299427	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98024200-98034600	Weak transcription	Esophagus	oesophagus
2	chr9:98028400-98045400	Weak transcription	Gastric	stomach
3	chr9:98029400-98038200	Weak transcription	Primary T cells from cord blood	blood
4	chr9:98030400-98035400	Weak transcription	GM12878-XiMat	blood
5	chr9:98031200-98034800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:98032000-98045400	Weak transcription	Pancreas	Pancrea
7	chr9:98032200-98034800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:98033400-98037400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:98033800-98034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:98033800-98038000	Weak transcription	Psoas Muscle	Psoas

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